ProteinScape Features

Database Management

•  Project-oriented data management
•  Flexible analyte hierarchy
•  User administration

Database Search Features

•  ProteinExtractor – protein list compilation from different sources, e.g. MS instruments, search engines, parameters
•  Decoy validation – creating peaklist for a pre-defined False Positive Rate
•  Support of different fragmentation types, e.g. CID, ETD, ECD
•  Automatic result assessment
•  Interactive result validation (integration with BioTools)
•  Database searches in automated workflows
•  2nd round searches

Interactive Viewers

•  LC-MS survey
•  Spectrum viewer
•  Sequence viewer
•  Gel viewer
•  Peptide statistics

Advanced Result Processing

•  Export – all tables can be exported to classic spreadsheet software
•  Reporting – invaluable for publication
•  Queries – convenient access to the information stored in the ProteinScape database
•  Quantitation –  supporting many kinds of chemical and metabolical labels

Supported Mass Spectrometers

•  All Bruker MS systems and many other instruments are supported.